QMRITools

QMRITools package written by Martijn Froeling.  Contains various sub-packages with functions for processing, evaluating, simulating, importing, exporting and simulating of quantitative MRI data. It provides a range of functions to process DWI, DTI, Dixon and T2mapping data, phase unwrapping etc. If additional features are required please contact me on m.froeling@gmail.com

CardiacTools Functions for processing cardiac MRI data.

DenoiseTools Functions for noise suppression of multi dimensional MRI data.

DixonTools Functions for Dixon data reconstruction and analysis.

ElastixTools Functions for data registration using the Elastix software.

GeneralTools Functions that are used in other tools.

GradientTools Functions for diffusion gradient optimization and manipulation.

IVIMTools Functions for fitting and analysis of IVIM MRI data.

JcouplingTools Functions for simulation of j-coupled spectra.

MaskingTools Functions for generating and processing of masks and segmentations.

NiftiTools Functions for importing and exporting Nifti (*.nii) data.

PlottingTools Functions for displaying and visualization of multi dimensional data.

ProcessingTools Functions for generals processing of data.

ReconstructionTools Functions for basic MRI reconstruction and coil combination.

RelaxometryTools Functions for fitting and analysis of relaxometry data (e.g. T2, T1 and T1rho).

SimulationTools Functions for simulating various MRI contrasts such as DWI, DTI, Dixon and EPG data.

SpectroTools Functions for fitting, processing and analysis of MRS data.

TaggingTools Functions for the analysis of tagging MRI data.

TensorTools Functions for fitting processing and analysis of DTI data.

TractographyTools Functions for DTI based fiber tractography.

CoilTools  ▪  ImportTools  ▪  PhysiologyTools  ▪  VisteTools