TemplateToVolume

TemplateToVolume[{masks,voxM},{template,voxT}]

registers a mask or a series of masks to the given muscle template. The default output are the mesh points per mask volume and the cell needed to generate the mesh as {points, mesh}.

Details
Details and Options Details and Options
Examples  
QMRITools`
QMRITools`

TemplateToVolume

TemplateToVolume[{masks,voxM},{template,voxT}]

registers a mask or a series of masks to the given muscle template. The default output are the mesh points per mask volume and the cell needed to generate the mesh as {points, mesh}.

Details

  • The following options can be given:
  • MeshPoints{500, 2000}MeshPoints is an option for TemplateToVolume. It specifies how many mesh coordinates will be used in the template.
    TemplatePadding20TemplatePadding is an option for TemplateToVolume. It specifies how much the template will be padded to prevent cut off of larger muscles.
    TemplateDilation2TemplateDilation is an option for TemplateToVolume. It specifies how much the template is dilated during registration. The value is specified in mm and it helps to properly align the points.
    VolumeRescaleTrueVolumeRescale is an option for TemplateToVolume. If this option is set to True the volume of each muscle will be normalized to the mean volume of the template volumes or the template volume.
    SplineSpacing5SplineSpacing is an option for TemplateToVolume. It defines how big the b-splines are during the registration process. Its value is multiplied with the voxel size which then becomes the spline spacing.
    TemplateOutput"Points"TemplateOutput is an option for TemplateToVolume. The value can be "Meshes" "PointsCells" or "Points". The "Meshes" "PointsCells" outputs are needed for template and model visualization. The "Points" is the only thing needed for model fitting.
    MonitorFalseMonitor[expr,mon] generates a temporary monitor cell in which the continually updated current value of mon is displayed during the course of evaluation of expr.

Examples